You might try rehoming the door. Erase the sliding door DTC's by removing the No. 7 fuse in the under-dash fuse box and reinstall it. Then turn off the Main switch for the doors and make sure the ignition switch is in LOCK (0). Fully close the sliding door manually. Turn the ignition to ON (II) and then turn on the Main switch. Test the door operation several times. note: If you have an 99-04 Odyssey let me know the procedure is different.
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Best soluton is to unplug the battery for 2 to 4 hours while all the doors are closed but not locked.
after two hours simply connect the battery, switch on the car then open and close the door manualy. The sliding door should close fully without the gap, then try using the switch or the handle to open the door. It should work perfectly.
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